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Publications

  1. Rau, Tobias ; Weik, Florian ; Holm, Christian: A dsDNA model optimized for electrokinetic applications. In: Soft Matter, Soft Matter. (2017), Nr. 13, S. 3918–3926
  2. Lahnert, Michael ; Burstedde, Carsten ; Holm, Christian ; Mehl, Miriam ; Rempfer, Georg ; Weik, Florian: Towards Lattice-Boltzmann on Dynamically Adaptive Grids - Minimally-Invasive Grid Exchange in ESPResSo. In: Papadrakakis, M. (Hrsg) ; Papadopoulos, V. (Hrsg) ; Stefanou, G. (Hrsg) ; Plevris, V. (Hrsg) (Hrsg.) ; Papadrakakis, M. (Hrsg) ; Papadopoulos, V. (Hrsg) ; Stefanou, G. (Hrsg) ; Plevris, V. (Hrsg) (Hrsg.): ECCOMAS Congress 2016, VII European Congress on Computational Methods in Applied Sciences and Engineering., ECCOMAS Congress 2016, VII European Congress on Computational Methods in Applied Sciences and Engineering.. Bd. 2016, 2016
  3. Kuron, Michael ; Rempfer, Georg ; Schornbaum, Florian ; Bauer, Martin ; Godenschwager, Christian ; Holm, Christian ; de Graaf, Joost: Moving Charged Particles in Lattice Boltzmann-Based Electrokinetics. In: J. Chem. Phys, J. Chem. Phys. (2016)
  4. Rempfer, Georg ; Ehrhardt, Sascha ; Laohakunakorn, Nadanai ; Davies, Gary B. ; Keyser, Ulrich F. ; Holm, Christian ; de Graaf, Joost: Selective Trapping of DNA Using Glass Microcapillaries. In: Langmuir, Langmuir. Bd. 32 (2016c), Nr. 33
  5. Rempfer, Georg ; Ehrhardt, Sascha ; Holm, Christian ; de Graaf, Joost: Nanoparticle Translocation through Conical Nanopores: A Finite Element Study of Electrokinetic Transport. In: Macromolecular Theory and Simulations, Macromolecular Theory and Simulations. Bd. 25 (2016b)
  6. Weik, Florian ; Kesselheim, Stefan ; Holm, Christian: A coarse-grained DNA model for the prediction of current signals in DNA translocation experiments. In: The Journal of Chemical Physics, The Journal of Chemical Physics. Bd. 145, AIP Publishing (2016), Nr. 19, S. 194106
  7. Rempfer, Georg ; Davies, Gary B. ; Holm, Christian ; de Graaf, Joost: Reducing spurious flow in simulations of electrokinetic phenomena. In: J. Chem. Phys., J. Chem. Phys. Bd. 145 (2016a), Nr. 44901
  8. Ertl, Thomas ; Krone, Michael ; Kesselheim, Stefan ; Scharnowski, Katrin ; Reina, Guido ; Holm, Christian: Visual Analysis for Space-Time Aggregation of Biomolecular Simulations. In: for Chemistry, R. S. (Hrsg.) Faraday Discussions, Faraday Discussions. Bd. 169 (2014)
  9. Kesselheim, Stefan: Simulations of DNA Translocation through Nanopores, Institut für Computerphysik, 2014
  10. Kesselheim, Stefan ; Müller, Wojciech ; Holm, Christian: Origin of Current Blockades in Nanopore Translocation Experiments. In: Physical Review Letters, Physical Review Letters. Bd. 112 (2014), Nr. 1
  11. Kesselheim, Stefan ; Holm, Christian: Modeling DNA in Nanopores. In: Podgornik, R. ; Dean, D. S. ; Naji, A. ; Dobnikar, J. (Hrsg.) ; Podgornik, R. ; Dean, D. S. ; Naji, A. ; Dobnikar, J. (Hrsg.): Electrostatics of Soft and Disordered Media, Electrostatics of Soft and Disordered Media : Pan Stanford, 2013
  12. Arnold, Axel ; Breitsprecher, K. ; Fahrenberger, Florian ; Kesselheim, Stefan ; Lenz, Olaf ; Holm, Christian: Efficient algorithms for electrostatic interactions including dielectric contrasts. In: Entropy, Entropy. Bd. 15 (2013)
  13. Chakrabarti, Rajarshi ; Kesselheim, Stefan ; Kosovan, P. ; Holm, Christian: Tracer diffusion in a crowded cylindrical channel. In: Phys Rev E, Phys Rev E. Bd. 87 (2013)
  14. Rempfer, Georg: A Lattice Model for Electrokinetics, 2013
  15. Müller, Wojciech: Full atomistic simulations of DNA in a nanopore, 2012
  16. Kesselheim, Stefan ; Sega, Marcello ; Holm, Christian: Effects of dielectric mismatch and chain flexibility on the translocation barriers of charged macromolecules through solid state nanopores. In: Soft Matter, Soft Matter. Bd. 8 (2012)
  17. Arnold, Axel ; Lenz, Olaf ; Kesselheim, Stefan ; Weeber, Rudolf ; Fahrenberger, Florian ; Röhm, Dominic ; Kosovan, P. ; Holm, Christian: ESPResSo 3.1 - Molecular Dynamics Software for Coarse-Grained Models. In: Griebel, M. ; Schweitzer, M. A. (Hrsg.) ; Griebel, M. ; Schweitzer, M. A. (Hrsg.): Lecture Notes in Computational Science and Engineering, Lecture Notes in Computational Science and Engineering. 89. Aufl. : Springer, 2012
  18. Kesselheim, Stefan ; Sega, Marcello ; Holm, Christian: Applying ICC* to DNA translocation: Effect of dielectric boundaries. In: Computer Physics Communications, Computer Physics Communications. Bd. 182 (2011), Nr. 1
  19. Weik, Florian: Implementation of an improved P3M algorithm, 2011
  20. Kesselheim, Stefan ; Sega, Marcello ; Holm, Christian: The ICC* Algorithm: A fast way to include dielectric boundary effects. In: Comp. Phys. Comm., Comp. Phys. Comm. (2010b)
  21. Kesselheim, Stefan ; Sega, Marcello ; Holm, Christian: Influence of pore dielectric boundaries on the translocation barrier of DNA. In: arXiv:1002.2759v1 cond-mat.soft, arXiv:1002.2759v1 cond-mat.soft. (2010a)
  22. Tyagi, Sandeep ; Süzen, Mehmet ; Sega, Marcello ; Barbosa, M. ; Kantorovich, Sofia S. ; Holm, Christian: An iterative, fast, linear-scaling method for computing induced charges on arbitrary dielectric boundaries in large system simulations. In: J. Chem. Phys., J. Chem. Phys. (2010)
  23. Rempfer, Georg: Lattice-Boltzmann Simulations in Complex Geometries, 2010